SG_XIIIb sub-family

Sub-families phylogenies is inferred using MAFFT (iterative refinement method) then TrimAl for multiple alignment, and PhyML3.0 (LG+gamma model) for maximum likelihood phylogeny.

How to display the tree:

Command lines used to obtain this phylogeny are:

mafft --maxiterate 100 --localpair in.fasta > out.fasta
trimal -in in.fasta -out out.fasta -htmlout out.html -gt 0.2
phyml -i in.phy -m LG -a e -c 4 -s BEST