Supplementary material |
Global analysis Species tree Alignments Tables SG_I SG_II SG_III SG_IV SG_V SG_VI SG_VIIa SG_VIIb SG_VIII-1 SG_VIII-2 SG_IX SG_Xa SG_Xb SG_XI SG_XIIa SG_XIIb SG_XIIIa SG_XIIIb SG_XIV SG_XV |
Command lines used to obtain alignments are:
mafft --retree 10 in.fasta > out.fasta
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Whole LRR-kinase full alignment (fasta)
Whole LRR-kinase cleaning report (html)
Whole LRR-kinase trimed alignment (fasta)
Command lines used to obtain alignments are:
mafft --maxiterate 100 --localpair in.fasta > out.fasta
|
SG_I full alignment (fasta)
SG_I cleaning report (html)
SG_I trimed alignment (fasta)
SG_II and SG_VIII-2 group full alignment (fasta)
SG_II and SG_VIII-2 group cleaning report (html)
SG_II and SG_VIII-2 group trimed alignment (fasta)
SG_III full alignment (fasta)
SG_III cleaning report (html)
SG_III trimed alignment (fasta)
SG_IV full alignment (fasta)
SG_IV cleaning report (html)
SG_IV trimed alignment (fasta)
SG_V full alignment (fasta)
SG_V cleaning report (html)
SG_V trimed alignment (fasta)
SG_VI full alignment (fasta)
SG_VI cleaning report (html)
SG_VI trimed alignment (fasta)
SG_VIIa full alignment (fasta)
SG_VIIa cleaning report (html)
SG_VIIa trimed alignment (fasta)
SG_VIIb full alignment (fasta)
SG_VIIb cleaning report (html)
SG_VIIb trimed alignment (fasta)
SG_VIII-1 full alignment (fasta)
SG_VIII-1 cleaning report (html)
SG_VIII-1 trimed alignment (fasta)
SG_IX full alignment (fasta)
SG_IX cleaning report (html)
SG_IX trimed alignment (fasta)
SG_Xa full alignment (fasta)
SG_Xa cleaning report (html)
SG_Xa trimed alignment (fasta)
SG_Xb full alignment (fasta)
SG_Xb cleaning report (html)
SG_Xb trimed alignment (fasta)
SG_XI full alignment (fasta)
SG_XI cleaning report (html)
SG_XI trimed alignment (fasta)
SG_XIIa full alignment (fasta)
SG_XIIa cleaning report (html)
SG_XIIa trimed alignment (fasta)
SG_XIIb and SG_XV group full alignment (fasta)
SG_XIIb and SG_XV group cleaning report (html)
SG_XIIb and SG_XV group trimed alignment (fasta)
SG_XIIIa full alignment (fasta)
SG_XIIIa cleaning report (html)
SG_XIIIa trimed alignment (fasta)
SG_XIIIb full alignment (fasta)
SG_XIIIb cleaning report (html)
SG_XIIIb trimed alignment (fasta)
SG_XIV full alignment (fasta)
SG_XIV cleaning report (html)
SG_XIV trimed alignment (fasta)
cluster_10 : nucleic / proteic
cluster_11 : nucleic / proteic
cluster_12 : nucleic / proteic
cluster_13 : nucleic / proteic
cluster_14 : nucleic / proteic
cluster_15 : nucleic / proteic
cluster_16 : nucleic / proteic
cluster_17 : nucleic / proteic
cluster_18 : nucleic / proteic
cluster_19 : nucleic / proteic
cluster_20 : nucleic / proteic
cluster_21 : nucleic / proteic
cluster_22 : nucleic / proteic
cluster_24 : nucleic / proteic
cluster_25 : nucleic / proteic
cluster_26 : nucleic / proteic
cluster_27 : nucleic / proteic
cluster_28 : nucleic / proteic
cluster_29 : nucleic / proteic
cluster_33 : nucleic / proteic
cluster_34 : nucleic / proteic
cluster_35 : nucleic / proteic
cluster_36 : nucleic / proteic
cluster_37 : nucleic / proteic
cluster_38 : nucleic / proteic
cluster_39 : nucleic / proteic
cluster_40 : nucleic / proteic
cluster_41 : nucleic / proteic
cluster_42 : nucleic / proteic
cluster_43 : nucleic / proteic
cluster_44 : nucleic / proteic
cluster_45 : nucleic / proteic
cluster_46 : nucleic / proteic
cluster_47 : nucleic / proteic
cluster_48 : nucleic / proteic
cluster_49 : nucleic / proteic
cluster_50 : nucleic / proteic
cluster_51 : nucleic / proteic
cluster_52 : nucleic / proteic
cluster_53 : nucleic / proteic
cluster_54 : nucleic / proteic
cluster_55 : nucleic / proteic
cluster_56 : nucleic / proteic
cluster_57 : nucleic / proteic
cluster_58 : nucleic / proteic
cluster_59 : nucleic / proteic
cluster_60 : nucleic / proteic
cluster_61 : nucleic / proteic
cluster_62 : nucleic / proteic
cluster_64 : nucleic / proteic
cluster_65 : nucleic / proteic
cluster_66 : nucleic / proteic
cluster_67 : nucleic / proteic
cluster_68 : nucleic / proteic
cluster_69 : nucleic / proteic
cluster_70 : nucleic / proteic
cluster_71 : nucleic / proteic
cluster_72 : nucleic / proteic
cluster_73 : nucleic / proteic
cluster_74 : nucleic / proteic
cluster_75 : nucleic / proteic
cluster_76 : nucleic / proteic
cluster_77 : nucleic / proteic
cluster_78 : nucleic / proteic
cluster_79 : nucleic / proteic
cluster_80 : nucleic / proteic
cluster_31 : nucleic / proteic
cluster_82 : nucleic / proteic
cluster_113 : nucleic / proteic
cluster_116 : nucleic / proteic